PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0051s00490.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 328aa    MW: 36759.4 Da    PI: 6.8043
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0051s00490.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.81.9e-08121161954
                        HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         r RR++i +++  L++l+P       +K++ a++L +A++Y+k L
  Vradi0051s00490.1 121 ARHRREKISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 161
                        699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.964112161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-14118174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.23E-10118166No hitNo description
SMARTSM003531.1E-12118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-12118170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-6122161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDTNLNTTFT NVNTTYNHET MTTDQPNIIL HDHHQIPMGV GIWSNHHHPF HTQPSSSSST  60
NFLTDVLGIE FEEEEEEELG AMKEMMYQMA AMQPVDIDPA TVRKPKRRNV RISDDPQSVA  120
ARHRREKISE KIRILQRLVP GGTKMDTASM LDEAIRYVKF LKRQIRLLQS TPQLHSVNAT  180
APNSDCPFAP TTLNASTSVN LPLGIQFNAG IHDHAAHSLH LQHSSGDNEN EERIQVTFYE  240
IVEDFTTSIV ILAKGIQVSE FRKVFLAKGI QVSELWWLER ATRGYGGALT AEILATSSSA  300
LGKVRNTQGL NNPGSIYKEK MFGRSRE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014524459.11e-161PREDICTED: transcription factor HEC3-like
TrEMBLA0A0S3REW01e-137A0A0S3REW0_PHAAN; Uncharacterized protein
STRINGGLYMA04G39210.22e-92(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.13e-47bHLH family protein